Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEILQNNGITDFTHLSFVELDLSKDEGWKEAMLDCEYVLSVASPVFFGKFKNEEELISPAIEGITRILQAAKEAK-VKRVVMTSNFGAIGFSNADKNSITTEAYWTD---ELAKGLSA--YEKSKLIAEKEAWKFMENETELEFATINPVAIFGPSQSNHVSGSFDLLKNLLNGSMKRVINIPL-NVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVDKMPKKTLPNAAIRAAALFSKHAKEGELMINMNRQISNSKARDVLGWKPISTKEEAVLAAVDSLAKYGLLD |
| 2NNL Chain:D ((7-273)) | ---TVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAE--THLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQE-HQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK-ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPKAEG-RYICSSHDCI-ILDLAKMLREKYPE------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135060 for 2122 contacts (-63.6/contact) +
2D Compatibility (PS) -28456 + (NN) -10265 + (LL) 6004
1D Compatibility (HY) -19200 + (ID) 4350
Total energy: -191327.0 ( -90.16 by residue)
QMean score : 0.470
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