Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFETEIKKLMDSGVRGFNITTPFKERILPFLDELDNLAAASGAVNTVLKKED-KWYGFNTDGKGYLEGLEEIRSITEDDSILITGAGGASKAIYLALSTHTDAKITVANRTTEKAIEMTK---DNNNHHAITLEEAEKQLADFTIIIQTTSIGLEASKNKSPISLANVKQGTICSDIIYNPAETAFLKEAKKNGA-ITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN |
1NYT Chain:A ((1-266)) | METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-LDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGH--EFDLIINATSSGISGDIPAIPSSL--IHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPD----VEPVIKQL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95903 for 2283 contacts (-42.0/contact) +
2D Compatibility (PS) -28145 + (NN) -10451 + (LL) 460
1D Compatibility (HY) -20400 + (ID) 5000
Total energy: -159439.0 ( -69.84 by residue)
QMean score : 0.542
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