Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKEL--------EAYAKENEVPIMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLP-DAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEILAHGP---FDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3TR6 Chain:A ((15-224))
----LYQYLLQVSLREPPLLAELREETTRSFSTYAMQTA-----PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENN----QLIRLFNQKVYKDERVDMILIPIGDGLTLARKK------
General information:
TITO was launched using:
RESULT:
Template:
3TR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81673 for 1599 contacts (-51.1/contact) +
2D Compatibility (PS) -21473 + (NN) -10162 + (LL) 1356
1D Compatibility (HY) -11600 + (ID) 3000
Total energy: -126552.0 ( -79.14 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_3TR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR6-query.scw
PDB file :
Tito_Scwrl_3TR6.pdb
: