Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFS--NETVTIVPGEKHIFWTDIKSYMQEDEVLNIYV-RSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDIV---ANESRVGGVGSTGR
1DUP Chain:A ((16-136))
-------------KEFP-----LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDY------QGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDF--------------
General information:
TITO was launched using:
RESULT:
Template:
1DUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44588 for 722 contacts (-61.8/contact) +
2D Compatibility (PS) -12740 + (NN) -3867 + (LL) 1244
1D Compatibility (HY) -9200 + (ID) 1900
Total energy: -71051.0 ( -98.41 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1DUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DUP-query.scw
PDB file :
Tito_Scwrl_1DUP.pdb
: