Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVENKVIVLAGMIGAGKSSYT----------ELIANELGTKAFYESIKD---------NRILEMFYDDPKRWAFALQIYFLNTRFR----SIKAALTDQNN---VLDRSIYEDA-LFTQINFEEGNISEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQIDDNPGL-LEYYKHLHSRYDSWFASYDKSETLVINIDEIDINKPNDADYVMQLIHEKLKR
3QEJ Chain:A ((38-245))
---TRIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNV-----ELTMEQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFG--QSLELDGIIYLQATPETCLHRIYLRGRNEEQ-----GIPLEYLEKLHYKHESWLL----HRTLKTNFD-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3QEJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78036 for 1231 contacts (-63.4/contact) +
2D Compatibility (PS) -18423 + (NN) -6798 + (LL) 2328
1D Compatibility (HY) -13600 + (ID) 3050
Total energy: -117579.0 ( -95.52 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_3QEJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QEJ-query.scw
PDB file :
Tito_Scwrl_3QEJ.pdb
: