Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDATVIAVAEADFDKY--KGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGTMDGEKVLNDALAMIEK
3NBM Chain:A ((9-89))
---VLVLCAGSGTSAQLANAINEGANLTEV--RVIANSGAYGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEY------------------
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61976 for 540 contacts (-114.8/contact) +
2D Compatibility (PS) -8850 + (NN) -7031 + (LL) 1380
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -82827.0 ( -153.38 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: