Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPII-ALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSN----LSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
1L2U Chain:A ((14-239))
-NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREAL---VPFGKDAPLLIAVTVLTS-----MEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQ---------IMTPEQALSAGVDYMVIGRPVTQSVDPA----QTLKAINA
General information:
TITO was launched using:
RESULT:
Template:
1L2U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104766 for 1732 contacts (-60.5/contact) +
2D Compatibility (PS) -22801 + (NN) -9481 + (LL) 1112
1D Compatibility (HY) -15200 + (ID) 5000
Total energy: -156136.0 ( -90.15 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1L2U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2U-query.scw
PDB file :
Tito_Scwrl_1L2U.pdb
: