Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQGVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSSVEVISESHDYPITPKEHGT-----EFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGSAPEGTTELFHTKYFEEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPRITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPV-FITHYPKAIKPFYMPEDPENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGSVPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP |
| 1WYD Chain:A ((13-429)) | ---------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDK---NSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAK-APLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVK---IPIKRLKYTEAIEILRSKGY-NIKFGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTKSKSE-PELSESFDLIY--KFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1WYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189731 for 3183 contacts (-59.6/contact) +
2D Compatibility (PS) -43921 + (NN) -16926 + (LL) 1508
1D Compatibility (HY) -26400 + (ID) 7300
Total energy: -282770.0 ( -88.84 by residue)
QMean score : 0.483
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