Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKYCLVEKDTCIACGACSIHAPDVFDYDTEGLAFNILDNNTGTKEIPEDLVEMVIDAEFACPSLSIKVSDSSFH
4OV1 Chain:A ((9-68))
-----VDQDKCQGHARCKALAPELFDLDDYGNA-----HEKGDGVVPADLIDKAWLAKSNCPENAIDITE----
General information:
TITO was launched using:
RESULT:
Template:
4OV1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37077 for 390 contacts (-95.1/contact) +
2D Compatibility (PS) -6151 + (NN) -2827 + (LL) 1040
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -47965.0 ( -122.99 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_4OV1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OV1-query.scw
PDB file :
Tito_Scwrl_4OV1.pdb
: