Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEK-KSGTPTMGAVVFITAMLISFLVFSFISGEVSAATWLLFIALALFGALGFLDDYIKVVQKRNLGLTSKQKFLGQVVISILF-YLVYHFNDFAETLNIPF-TNIEVDLGWFFVIFILFWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFY------QEQM---------DVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFKATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF |
| 4J72 Chain:A ((20-363)) | -------------FAFNVLKYITFRSFTAVLIAFFLTLVLSPSFINRLKKYTPTMGGIVILIVVTLSTLLLMRWD---IKYTWVVLLSFLSFGTIGFWDDYVKLKNKK--GISIKTKFLLQVLSASLISVLIYYWADIDTILYFPFFKELYVDLGVLYLPFAVFVIVGSANAVNLTDGLDGLAIGPAMTTATALGVVAYAVGHSKIAQYLNIPYVPYAGELTVFCFALVGAGLGFLWFNSFPAQMFMGDVGSLSIGASLATVALLTKSEFIFAVAAGVFVFETISVILQIIYFRWTGGKRLFKRAPFHHHLELNGLPEPKIVVRMWIISILLAIIAISMLK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -337585 for 2635 contacts (-128.1/contact) +
2D Compatibility (PS) -31156 + (NN) -7551 + (LL) 1996
1D Compatibility (HY) -38400 + (ID) 6100
Total energy: -418796.0 ( -158.94 by residue)
QMean score : 0.307
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