Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLNGYADFVVPPLEGFWWSEEKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVAQKKKPDVDTSRVKLVRFEEGECVQMMHIGPFSEEVKTVAELH-QFMETEGLHNDTGAVRKHHEIYLSDPRKADPEKMKTILRLPVS
1JYH Chain:A ((1-153))
-------------------MNYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIVP-K-------------EWVAVYYDNPD--ETPAEKLRCDTVVTVPGYFTLP---------------ENSEGVILTEITGGQYAVAVARVVGDDFAKPWYQFFNSLLQDSAYEMLP---KPCFEVYLNNGA--EDGYWDIEMYVAVQ
General information:
TITO was launched using:
RESULT:
Template:
1JYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22249 for 1050 contacts (-21.2/contact) +
2D Compatibility (PS) -16138 + (NN) -4771 + (LL) 4060
1D Compatibility (HY) -6800 + (ID) 700
Total energy: -46598.0 ( -44.38 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1JYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYH-query.scw
PDB file :
Tito_Scwrl_1JYH.pdb
: