Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPAT--DIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
4P9N Chain:A ((21-277)) | ----------------------------------------------------------ASVDEVRKIFRQLASAAPKA---EVRKVEDIKIPGSETSINARVYFPKAKGPYGVLVYLHGGGFVIGDVESYDPLCRAITNACNCVVVSVDYRLAPEYKFPSAVIDSFDATNWIYNNLDKFDGEMG-IAIAGDSAGGNLAAVVALL--SKGKLDLKYQILIYPAVGFDSVSR-------SMIEYSDGFFLTREHIEWFGSQYLRSPADL-LDFRFSPIIAQDLSGLPPALIITAEYDPLRDPEEAYANRLLQAGVPVTSVRFNNVIHGFLS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139411 for 2226 contacts (-62.6/contact) +
2D Compatibility (PS) -27678 + (NN) -16878 + (LL) 6952
1D Compatibility (HY) -22000 + (ID) 5750
Total energy: -204765.0 ( -91.99 by residue)
QMean score : 0.628
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