Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNAVSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
3RTL Chain:A ((12-114))
-------------------------------------YVVYESVENNESMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPYVEGKTLYDAIVKVHV--KTIDYDGQYHVRIVDKE-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RTL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46984 for 680 contacts (-69.1/contact) +
2D Compatibility (PS) -11723 + (NN) -6855 + (LL) 6472
1D Compatibility (HY) -8800 + (ID) 1200
Total energy: -69090.0 ( -101.60 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3RTL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RTL-query.scw
PDB file :
Tito_Scwrl_3RTL.pdb
: