Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAE-DR-TAEQQKKEQTTFHMARLFGVKHINCGLLEKIPEEQIIVALGELCDRA-EELIIGLEFMPYSGVADLQAAWRVAEACGRDNAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEHGVNPRV-MGVEVISDSMVATGLEYAALKVYNATKKVLDEAWPEISPR
2G0W Chain:A ((22-296))
---------KCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKK--EQTTFHMARLFGVKHINCGLLEKIPEEQIIVALGELCDRAEE-LIIGLEFMPYSGVADLQAAWRVAEACGRDNAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDRLAPGEGYGDTVGFAKILKEH-GVNPRVMGVEVISDSMVATGLEYAALKVYNATKKVLDEAWPEISPR
General information:
TITO was launched using:
RESULT:
Template:
2G0W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161483 for 2398 contacts (-67.3/contact) +
2D Compatibility (PS) -29753 + (NN) -17556 + (LL) 292
1D Compatibility (HY) -35600 + (ID) 12950
Total energy: -257050.0 ( -107.19 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_2G0W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G0W-query.scw
PDB file :
Tito_Scwrl_2G0W.pdb
: