Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETTWLHEAAAGTIEPEKLMYPLDKVVNDTK--TTFIQDTVVKINKDEKTVTLDA--------------------NGDISYDYLLIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKW----KTDP-RDELLTIIVGGAGFTGIEFLGELTNRIPELVKQYDVP--REKVRIYCMEAAPKVLPQFDAKLVDYGVGVLEDRGVEFH----VGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIE------ASGFEAGRGRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVK------------GETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGVLASKGKFKFYK |
| 4G74 Chain:A ((42-485)) | --KPNVLILGSGWGAISFLKHIDTKKYNVSII--SPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKF-LPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRG-LAVNDFLQVKGSNNIFAIGDNAFA-------GLPPTAQVAHQEAEYLAKNFDKMAQIPNFQDKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYL---SMILSARSRLKVF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4G74.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -211886 for 3236 contacts (-65.5/contact) +
2D Compatibility (PS) -41505 + (NN) -12689 + (LL) 568
1D Compatibility (HY) -26800 + (ID) 6050
Total energy: -298362.0 ( -92.20 by residue)
QMean score : 0.499
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