Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDEKTKIYDITIIGGGPVGLFAAFYAGMRNASVKIIESLPQLGGQLSTLYPEKYIYDIPGYPSVRAQELVNNLIQQMKPFDPTVALEEAVQSVEKQVDGTFEIITKKDTHYSKAIIITAGNGAFEPRRLDLPEAEQYEGTNIHYF-INDLSRFSGRRVAVCGGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNNLEKSSIAIKTPFIPTEVLG--NGDKLT-HITLQEVKGDTTETLEIDDFIINYGFVSSLGPIKNWGLELERNS-IVVNSKMETSIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE |
| 3F8R Chain:A ((16-319)) | -------FDVIIVGLGPAAYGAALYSARYMLKTLVIGETP--GGQLTE---AGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD-IVEKIENR---EFVVKTKRKGEF-KADSVILGIGV-KRRKLGVPGEQEFAGRGISYCSVCDAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKP---NVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3F8R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204409 for 2578 contacts (-79.3/contact) +
2D Compatibility (PS) -32111 + (NN) -13321 + (LL) 2700
1D Compatibility (HY) -21600 + (ID) 4200
Total energy: -272941.0 ( -105.87 by residue)
QMean score : 0.454
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