Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHL-TDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
1WVI Chain:A ((1003-1254))
---YKGYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNLTYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEWDF-
General information:
TITO was launched using:
RESULT:
Template:
1WVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157997 for 2170 contacts (-72.8/contact) +
2D Compatibility (PS) -27134 + (NN) -11761 + (LL) 80
1D Compatibility (HY) -26400 + (ID) 6350
Total energy: -229562.0 ( -105.79 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1WVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WVI-query.scw
PDB file :
Tito_Scwrl_1WVI.pdb
: