Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQGTITLDGEDVLEMEVD-ERARAGLFLAMQYPSEISGVTNAEFIRAAI----NSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLLMIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEGYDWIKQELGIELEEEEAVDQQ
4YMT Chain:J ((4-221))-----VNDVYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCI--NLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAV-----DLLAKVGLLDKKDQYPIK-----LSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVG-DRVIFMDDGVIVEEGTPE------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4YMT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118697 for 1695 contacts (-70.0/contact) +
2D Compatibility (PS) -22982 + (NN) -7855 + (LL) 4332
1D Compatibility (HY) -13200 + (ID) 3350
Total energy: -161752.0 ( -95.43 by residue)
QMean score : 0.482

(partial model without unconserved sides chains):
PDB file : Tito_4YMT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YMT-query.scw
PDB file : Tito_Scwrl_4YMT.pdb: