Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLTTRKALYYLDKGKTKEAIRLLETCWKQEVTTKNKRDIFTATVLLSDVLYQSGEHFPEIYQQLMS--ILEEMQDLEAVEFEREKAKQIFAELDEYFSEVGTFFQGDSLAELWLEFDYENDYKDVYPTPQRVAAIEAELGYKLPKSYIYLMRHTQNGGIVSTGSVPTTEPSSWSENCVAITGIMGIGNQGISALNGMHNTNFWIEEWGYPDVGLAIADCPSAGHDMVFLDYRNCGKTGEPAVVHIDQEADYKIMKLADNFEAFILSLYREEY |
3LDP Chain:A ((241-312)) | ------------------------------------------------------EHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLF-------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9255 for 430 contacts (-21.5/contact) +
2D Compatibility (PS) -7490 + (NN) -1329 + (LL) 12880
1D Compatibility (HY) -800 + (ID) 750
Total energy: -6744.0 ( -15.68 by residue)
QMean score : 0.352
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