Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVAEYLD-VKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPAHFMSHIARL-SVDPENRVVMHCHATHLLAMTFTHELTERAFTRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGQSMDETFGLIETAEKAAEVYTIVMSQGGIKQAITDEQLKALGERFGVEAKAGYLNN
2V9E Chain:A ((2-273))
--QNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQVLVKVYSMGGMWQTISREELIALGKRFGVTPLASALS-
General information:
TITO was launched using:
RESULT:
Template:
2V9E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181184 for 2314 contacts (-78.3/contact) +
2D Compatibility (PS) -28969 + (NN) -12370 + (LL) 180
1D Compatibility (HY) -26400 + (ID) 6900
Total energy: -255643.0 ( -110.48 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2V9E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V9E-query.scw
PDB file :
Tito_Scwrl_2V9E.pdb
: