Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQVGSLVEMK----------KPHACVIKETGKKANQWKVLRVGADIKIQCTNCQHVIMMSRYDFERKLKKVLQP
1M1F Chain:A ((2-32))
--ERGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSFARTAGFAVSLDGVGIRTTGVVRCDQP
General information:
TITO was launched using:
RESULT:
Template:
1M1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6720 for 75 contacts (-89.6/contact) +
2D Compatibility (PS) -2310 + (NN) 1234 + (LL) 300
1D Compatibility (HY) -2000 + (ID) 100
Total energy: -9596.0 ( -127.95 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1M1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M1F-query.scw
PDB file :
Tito_Scwrl_1M1F.pdb
: