Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVVQLNNQYINDENLKKRYEAEELRRKNRLMGW--VLIFVMLLFILPTYNLVKSYRTLQERRQE----VVKLTKDYQTLTNRTENQKLLAKQLKNPDYVQKYARAKYYFSKTGEMIYPLPDLLPK
4KVA Chain:A ((115-201))
--KPVVDYIDNQFEN-------YLQEELKMKRSMQAFHDTRVHVCLYFIAPTGHSLKSIDLVAMKKLENKVNVIPVIAKSDTIT-KSELQKFKARILSEIQSNEIGIYQFPTDDEAVSETNSVMNQHIP
General information:
TITO was launched using:
RESULT:
Template:
4KVA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6747 for 407 contacts (16.6/contact) +
2D Compatibility (PS) -8536 + (NN) 1808 + (LL) 452
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -5729.0 ( -14.08 by residue)
QMean score : 0.151
(partial model without unconserved sides chains):
PDB file :
Tito_4KVA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KVA-query.scw
PDB file :
Tito_Scwrl_4KVA.pdb
: