Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
2GEB Chain:A ((10-184))
---EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGIDYAEKYRNLPFIGVLKPELY--
General information:
TITO was launched using:
RESULT:
Template:
2GEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124602 for 1357 contacts (-91.8/contact) +
2D Compatibility (PS) -19223 + (NN) -7547 + (LL) 524
1D Compatibility (HY) -20400 + (ID) 4600
Total energy: -175848.0 ( -129.59 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_2GEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GEB-query.scw
PDB file :
Tito_Scwrl_2GEB.pdb
: