Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --------------------------------------------MELIF--RIFEMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLVVKLLPDDYKFNLYI------ALLLFVPILA-SILLFLIYFQKRDFTSLGFTKDNNVLTTISGFITGSLLMFFIYICHWLSGFVEISSSNSFSFGPFFFLFLAYFIQSLT--------------EEILFRGYVMTTVTKFKG--SFAGVLCNSMLFSFIHFRNYGITAIALFNLFLLGIIFSILF-NMTKNILFVTGVHTTWNFTMGCVLGNKVSGGYSPVSL--FRITENSSFALWNGGDFGFEGGVLCS-------------LILVGCLAYFSLESVRVSVRY--------- |
4BWZ Chain:A ((3-386)) | GAEHLLEIFYLLLAAQVCAFIFKRLNQPVVIGEVLAGVLVGPALLGLVHEGEILEFLAELGAVFLLFMVGLETRLKDILAVGKEAFLVAVLGVALPFLGGYLYGLEIGFETLPALFLGTALVATSVGITARVLQELGVLSRPYSRIILGAAVIDDVLGLIVLACVNGVAE--TGQVEVGAITRLIVLSVVFVGLAVFLSTLIARLPLERLPVGSPLGFALALGVGMAALAASIGLAPIVGAFLGGMLLSEVREKYRLEEPIFAIESFLAPIFFAMVGVRLELSALASPVVLVAGTVVTVIAILGKVLGGFLGALTQGVRSALTVGCGMAPRGEVGLIVAALGLKAGAVNEEEYAIVLFMVVFTTLFAPFALKPLIAWTERERAAKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BWZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -240196 for 2497 contacts (-96.2/contact) +
2D Compatibility (PS) -28467 + (NN) 2941 + (LL) 332
1D Compatibility (HY) -17200 + (ID) 2700
Total energy: -285290.0 ( -114.25 by residue)
QMean score : 0.176
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