Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNH-MDKDVFRRDLGSLTDVYQVVLEKLIAL
4O7N Chain:A ((7-231))
-----VYEGKAKKMIPIDDDKLIME-FKDDATAFDGTKKARFKGKGWLNAQLSVIFFKLLEEHGIKTHFIGVAGGNRLIVEKLDMYPLEVVVRNVVAGSLKKRLPLPEGYELPEPIVELYYKNDELHDPMINYYHAKVLGISLD-EIKKIEEIALKVNEILKDYLAKKGIILVDFKLEFGKDKNGDIVLADEISPDTCRFWDAKTKRSLDKDVFRFDKGDLIEAYKEIYERITGE
General information:
TITO was launched using:
RESULT:
Template:
4O7N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58300 for 1721 contacts (-33.9/contact) +
2D Compatibility (PS) -23997 + (NN) -3811 + (LL) 640
1D Compatibility (HY) -22800 + (ID) 5400
Total energy: -113668.0 ( -66.05 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_4O7N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O7N-query.scw
PDB file :
Tito_Scwrl_4O7N.pdb
: