Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLTEGSIDGIAISSAGMVDPDEGCIFYSGPQIPNYAGTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGSAKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHL----------SDGDFQDLASTTALI-------------ADVAKAHGD-EISRWDGRRIFQEAKEGNEKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQKDYLQDKLSESLKRNLVTSLAEKTAIVF-AQHENQAGMLGAYYHFKNRG |
| 3VGM Chain:A ((2-306)) | -GLTIGVDIGGTKIAAGVVDEEGRILSTFKVATPPTA--EGIVDAICAAVAGASEGHDVEAVGIGAAGYVDDKRATVLFA-PNI-DWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194112 for 2482 contacts (-78.2/contact) +
2D Compatibility (PS) -29564 + (NN) -7995 + (LL) -356
1D Compatibility (HY) -18000 + (ID) 4000
Total energy: -254027.0 ( -102.35 by residue)
QMean score : 0.451
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