Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNLFKTIGIIGGGQLGQMMAIAAIYMGHKVITLDPASDCSASRVSEV-IVAPYDDVEALGQLAARCDVLTYEFENVDADGLDAVVSAGQLPQGTDLLRISQNRIFEKDFLANKAGVTVAPYKVVTSSLDLEGFDLTKTY-----VLKTATGGYDGHGQKVIRSAEDLPEAQQLANSAECVLEEFVDFDLEISVIVS-GNGQDVTVFPVQENIHRNNILSKTIVPARISDQL-ADKAKKMAVQIAKELQLSGTLCVEMFVTAD-DIIVNEIAPRPHNSGHYSIEACDFSQFDTHILGVLGQPLPPIKLHAPAVMLNVLGQ----------HVQQAIDYVAENPSAHLHIYGKLEAKHNRKMGHVTVFTEDADEVEEF |
| 4E4T Chain:A ((38-402)) | ------LGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENVPAASLDFLARTTFVAPAGRCVAVAQDRIAEKRFI-EASGVPVAPHVVIESAAALAALDDAALDAVLPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPLKYEVSALIARGADGRSAAFPLAQNVHHNGILALTIVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLEDGSFVANEMAPRPHNSGHYTVDACATSQFEQQVRAMTRMPLGNPRQHSPAAMLNILGDVWFPNGAAAGAVTPPWDTVAAMPAAHLHLYGKEEARVGRKMGHVNFTAEMRDDAVAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E4T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -187528 for 2946 contacts (-63.7/contact) +
2D Compatibility (PS) -38848 + (NN) -18846 + (LL) 696
1D Compatibility (HY) -20800 + (ID) 7250
Total energy: -272576.0 ( -92.52 by residue)
QMean score : 0.492
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