Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLS----VESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQ------------GTYDDKISLFCDGGVPDPWY--TGDFEETYRLVNDGCKQWLTLINNSRD
2P4U Chain:A ((9-156))
-KSVLFVCLGNICRSPIAEAVFRKLVTDEKVSDNWAIDSSAVSDWNVGRPPDPRAVSCLRNHGISTAHK--ARQITKEDFATFDYILCMDESNLRDLNRKSNQVKNCKAKIELLGSYDPQKQLI----IEDPYYGNDSDFEVVYQQCLRCCKAFLEKTY----
General information:
TITO was launched using:
RESULT:
Template:
2P4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61349 for 1039 contacts (-59.0/contact) +
2D Compatibility (PS) -13844 + (NN) -4515 + (LL) 88
1D Compatibility (HY) -12000 + (ID) 2750
Total energy: -94370.0 ( -90.83 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2P4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4U-query.scw
PDB file :
Tito_Scwrl_2P4U.pdb
: