Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANRLKEKYTNEVVPALTEKFNYSSVMAVPKVEKIVLNMGVGDAVSNAKNLEKAAAELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKVRGLDIVIVTTANTDEESRELLKGLGMPFAK
2ZJQ Chain:D ((3-179))
---QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKTDEEARALLQSMGLPFRK
General information:
TITO was launched using:
RESULT:
Template:
2ZJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58440 for 1282 contacts (-45.6/contact) +
2D Compatibility (PS) -18640 + (NN) -4189 + (LL) 272
1D Compatibility (HY) -20800 + (ID) 5600
Total energy: -107397.0 ( -83.77 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJQ-query.scw
PDB file :
Tito_Scwrl_2ZJQ.pdb
: