Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPAEGSRKVRNRVGRGTSSGNGKTSGRGQKGQKARSGGGVRLGFEGGQTPLFRRMPKRGFSNINAKEYALVNLDQLNVFEDGTEVTPVVLKEAGIVRAEKSGVKILGNGELTKKLSVKAAKFSKSAEAAITAKGGSIEVI
3J8G Chain:L ((2-143))
-RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGV-VDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE-
General information:
TITO was launched using:
RESULT:
Template:
3J8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15451 for 780 contacts (-19.8/contact) +
2D Compatibility (PS) -14804 + (NN) -1270 + (LL) 504
1D Compatibility (HY) -6400 + (ID) 3550
Total energy: -40971.0 ( -52.53 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_3J8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8G-query.scw
PDB file :
Tito_Scwrl_3J8G.pdb
: