Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPTRKRRVKKNIESGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSRKSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV
4KHP Chain:K ((1-116))
----------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
4KHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35775 for 886 contacts (-40.4/contact) +
2D Compatibility (PS) -13140 + (NN) -8795 + (LL) 884
1D Compatibility (HY) -7200 + (ID) 3450
Total energy: -67476.0 ( -76.16 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_4KHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KHP-query.scw
PDB file :
Tito_Scwrl_4KHP.pdb
: