Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTRNVLAISGNDIFSGGGLHADLATYVVNKLHGFVAVTCLTAMSDK---GFEVIPIEASILKQQLESLKDVEFGSIKLGLLPNVETAQVVLEFVKSKQECPVVLDPVLVCKENHDL-EVSQLREQLIAFFPYADVITPNLVEAQLLTGLSIENLDQMKIAAEKLYDMGAKHVVIKGGNRLNAEEATD-----LYYDGERFETYVFPVVDANNTGAGCTFASSIASQLAMGKNVEDAVKMSKGFVYQAIKASDKYGVVQHF
4YL5 Chain:A ((12-245))
----TVLCFSGLDPSGGAGLQADIEAIGQSGAHAAIACTALTIQNSQQVFGFEATSKEL-LLAQANAVVGDLPIKCVKSGMLGTTDNIAALAEFLRAHPDYQYVLDPVLVANSGGSLGDQATLVKAFVELIPLATLITPNTVELRALTG--VTDLDQ---ATQKLFEMGAKAVLVKGGH----EDTPDFIKNSLYIDGELAASSTCP----------CSLASFIAGRLALGDSLKIAVQHAETWLFGV-------------
General information:
TITO was launched using:
RESULT:
Template:
4YL5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158122 for 1845 contacts (-85.7/contact) +
2D Compatibility (PS) -23703 + (NN) -8154 + (LL) 2476
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -206253.0 ( -111.79 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4YL5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YL5-query.scw
PDB file :
Tito_Scwrl_4YL5.pdb
: