Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLLDSYKLKQDFPILNQLVNDEPLIYLDNAATTQKPNQVLETLRAYYQNDN--ANVHRGVHTLAERATAQYETAREKARQFLNAKSSKEILFTRGTTTGLNWVAKFAESILERGDEVLISIMEHHSNIIPWQQACERTGAKLVY-AYLKDGSLDLEDFYNKLSSKTKFVSLAHISNVLGCITPVKAIAERVHQVGAYMVVDGAQSAPHMAIDVQDLDCDFFALSGHKMLGPTGIGVLYGKESILDKMPPVEFGGEMIDFVYEQSATWKELPWKFEAGTPNIAGAIAFGEALDYLTDVGMDEIHQYEQSLVSYVLPKLQAIDGLTIYGPSD-AESHVGVIAFN-LEGLHPHDVATAMDYEGVAVRAGHHCAQP------LINHLGI-----HSAVRASFYFYNTKEDCDKLVDAIQKTKEFFNGTL |
| 3LVJ Chain:A ((24-395)) | -------------------------IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA-DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALY-----VRRKPRVRIEAQMHGGGHERG---------MRSGTLPVHQIVGMGEAYRIAKEEMATEMERL-RGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEG-----ESLIMALKDLAVSSG------SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -206831 for 3082 contacts (-67.1/contact) +
2D Compatibility (PS) -37845 + (NN) -12049 + (LL) 3144
1D Compatibility (HY) -22800 + (ID) 4750
Total energy: -281131.0 ( -91.22 by residue)
QMean score : 0.503
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