Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALSKLDNLYMAVVADHSKHPHHHGFL----EGVEQVQLNNPTCGDVISLSVKF-DGNIISDIAFAGNGCTISTASSSMMTDAVIGKTKEEALQLADVFSKMVQGDQNPKQEKLGDAEFLAGVSKFPQRIKCATLSWNALRKAIERDNQAEL
3LVL Chain:A ((4-119))
---------YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEA-------------------QAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKRE
General information:
TITO was launched using:
RESULT:
Template:
3LVL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48758 for 908 contacts (-53.7/contact) +
2D Compatibility (PS) -11882 + (NN) -4921 + (LL) 2016
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -71895.0 ( -79.18 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3LVL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LVL-query.scw
PDB file :
Tito_Scwrl_3LVL.pdb
: