Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIATINKNDLIALGFSEGTSKRIIRQGKELLIARGFRVYQNKRIGTIPASIATELLGFDVQNSSLSRG
1PNJ Chain:A ((29-49))
-ILTVNKGSLVALGFSDGQEAKPEEIGWLNGYNETTGERGDFPGTYVEYIGRKKISP-----------
General information:
TITO was launched using:
RESULT:
Template:
1PNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2339 for 76 contacts (-30.8/contact) +
2D Compatibility (PS) -2170 + (NN) 76 + (LL) 1532
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -5851.0 ( -76.99 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_1PNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PNJ-query.scw
PDB file :
Tito_Scwrl_1PNJ.pdb
: