Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKYSIRGENIEVTEAIREYVETKLSKVEKYFNEAQELDTRVNLKVYREKTAKV-EVTILIDSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYREKIPASQVFTTEFEAEPDEEAVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDNTTNVLYKREDGELGLIEAKGN
1N3G Chain:A ((4-87))
----NITSKQMEITPAIRQHVADRLAKLEKW----QTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N3G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27757 for 575 contacts (-48.3/contact) +
2D Compatibility (PS) -8830 + (NN) -225 + (LL) 6604
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -35558.0 ( -61.84 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1N3G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N3G-query.scw
PDB file :
Tito_Scwrl_1N3G.pdb
: