Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKKTFEENLQELETIVSRLETGDVALEDAIAEFQKGMLISKELQRTLKEAEETLVKVMQADGTEVEMDT
1PGY Chain:A ((10-43))
----------------EIARLMSLGLSIEEATEFYENDV-TYERY--LEILKSKQKE--------------
General information:
TITO was launched using:
RESULT:
Template:
1PGY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5774 for 185 contacts (-31.2/contact) +
2D Compatibility (PS) -3753 + (NN) -1610 + (LL) 3024
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -9513.0 ( -51.42 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_1PGY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PGY-query.scw
PDB file :
Tito_Scwrl_1PGY.pdb
: