Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVITVKNDIEGGKIAFTLLEEKMKAGAQT------LGLATGSSPITFYEEIVK----SNLDFSNMVSINLDEYVGIAASNDQSYSYFMHKHLFDAK--PFKENNLPNGLAKDLKEEIKRYDAVINA-NPIDFQILGIGRNGHIGFNEPGTPFDITTHVVDLAPSTIEANSRFF-NSIDDVPKQALSMGIGSIMKSKTIVLVAYGIEKAEAIASMIKGPITEDMPASILQKHDDVVIIVDEAAASKL
1CD5 Chain:A ((1-247))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMEL
General information:
TITO was launched using:
RESULT:
Template:
1CD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133018 for 1925 contacts (-69.1/contact) +
2D Compatibility (PS) -25654 + (NN) -16725 + (LL) 0
1D Compatibility (HY) -20400 + (ID) 4050
Total energy: -199847.0 ( -103.82 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1CD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CD5-query.scw
PDB file :
Tito_Scwrl_1CD5.pdb
: