Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIMFVAAEGAPFAKTGGLGDVIGALPKSLSKKGHDVVVVMPYYDMVDQKFGDQIENLMYFYTDVGWRHQYVGVKRL---SQDNVTFYFIDNQYYFYR-GHVYGDW------DDGERFAYFQLAALELMEKIN--FIPDVLHVHDYHTAMIPFLLKEKYHWIQAYNNIRTVFTIHNIEFQGQFGPEMLGDLFGVGAERYEDGTLRWNNCLNWMKAAILYSDRVTTVSPSYANEIKTPEFGKGLDQIM--RMEAGKLSGIVNGIDSDLLNPETDAFLPYHFSKSNLEGKIKNKLALQENLGLPQDKNVPLIGIVSRLTDQKGFDIIASELDNMLQQDIQMVILGTGYHHFEETFSYFASRYPEKLSANITFDLRLAQQIYAASDIFMMPSAFEPCGLSQMMAMRYGSLPLVHEVGGLKDTVVAF---NQFDGSGTGFSFNHFSGYWLMQTLKLALEVYNDYPEAWKKLQWQAMSKDFSWDTACVAYEQLYQQLQ |
| 3CX4 Chain:A ((1-476)) | MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTDA--------QVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFAYTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARG------RPAKSVFTVHNLAYQGMFYAHHMNDI-QLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSR-PSLWRFVQRQAMAMDFSWQVAAKSYRELYYRL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -311284 for 4205 contacts (-74.0/contact) +
2D Compatibility (PS) -51075 + (NN) -30385 + (LL) 2032
1D Compatibility (HY) -38000 + (ID) 8300
Total energy: -437012.0 ( -103.93 by residue)
QMean score : 0.506
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