Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQMNFTDRATRVAIIANGKYQSKRVASKLFAAFKHDPDFYLSKKDPDIVISIGGDGMLLSAFHMYEKQLDKVRFVGVHTGHLGFYTDYRDFEVDTLINNLKNDEGEQISYPILKVTITLEDGRV-IRARALNESTIKRIEKTMVADVVINQVVFERFRGDGILVSTPTGSTAYNKSLGGAVLHPTIEALQLTEISSLNNRVYRTLGSSVIIPKKDAIEIVPKRVGVYTISIDNKTVHYKNVTKIEYSIDEKSINFVSTPSHTSFWERVNDAFIGEPEH
3V7U Chain:A ((2-264))
-----------KYMITSKGDEKSDLLRLNMIAGFG-EYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYG---KEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSF-PFWRRVHDSFIED---
General information:
TITO was launched using:
RESULT:
Template:
3V7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156715 for 2110 contacts (-74.3/contact) +
2D Compatibility (PS) -28392 + (NN) -11334 + (LL) 868
1D Compatibility (HY) -24800 + (ID) 6100
Total energy: -226473.0 ( -107.33 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3V7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V7U-query.scw
PDB file :
Tito_Scwrl_3V7U.pdb
: