Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTIN--DHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
3IL2 Chain:A ((4-199))
------VPEAAISRLITYLRILEELEAQGVHRTSSEQLGELAQVTAFQVRKDLSYFGSYGT---GYTVPVLKRELRHILGLNRKWGLCIVGMGDLGSALADYPGFGES-FELRGFFDVDPEK-VGRPVRGGV----IEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENVDFLAGLTRLSFAILNPK
General information:
TITO was launched using:
RESULT:
Template:
3IL2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141356 for 1383 contacts (-102.2/contact) +
2D Compatibility (PS) -20615 + (NN) -6508 + (LL) 852
1D Compatibility (HY) -18800 + (ID) 3500
Total energy: -189927.0 ( -137.33 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_3IL2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IL2-query.scw
PDB file :
Tito_Scwrl_3IL2.pdb
: