Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIKKMLFGSYDYHKISEDGKEKLSIKIDSGWVIGLSILGLIGWLVLK
2K9J Chain:B ((697-713))
----------------------------LLSVMGAILLIGLAALL---
General information:
TITO was launched using:
RESULT:
Template:
2K9J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2672 for 58 contacts (-46.1/contact) +
2D Compatibility (PS) -1642 + (NN) 722 + (LL) 2308
1D Compatibility (HY) -2400 + (ID) 150
Total energy: -3834.0 ( -66.10 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_2K9J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K9J-query.scw
PDB file :
Tito_Scwrl_2K9J.pdb
: