Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVRDTF-FLQQKSQMASRADVSLAKDLQDTLHANQNYCV-----------------GMAANMIGSLKRVIII-----NVGIT-NLVMFNPVLVAKS--DPY-ETEESCLSLVGCRSTQRYRH--ITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
1LQW Chain:A ((4-163))
-MKDIIRDGHPTLRQK---AAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMF
General information:
TITO was launched using:
RESULT:
Template:
1LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70895 for 931 contacts (-76.1/contact) +
2D Compatibility (PS) -13118 + (NN) 4813 + (LL) 508
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -90392.0 ( -97.09 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQW-query.scw
PDB file :
Tito_Scwrl_1LQW.pdb
: