Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDS-VDIIEWRADALPK----DDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
3M7W Chain:A ((20-252))
-KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA
General information:
TITO was launched using:
RESULT:
Template:
3M7W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121236 for 1848 contacts (-65.6/contact) +
2D Compatibility (PS) -24156 + (NN) -10692 + (LL) 208
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -176226.0 ( -95.36 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3M7W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M7W-query.scw
PDB file :
Tito_Scwrl_3M7W.pdb
: