Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEDIKKQVRRAFDFRMAIRVYNNN-DIPKEDMEYILDTAWLSPSSVGLEGWRFLVLDRQTIAKFRDKLKEVAWGAQYQLDTASHFVLLLAEKGA----YYNADSMINSLVRRGLGDPAALESRIPLYKSFQENDMKIDSERSLWDWTAKQTYIALGNMMTAAAMIGVDSCPIEGFDYEKVNNILSKEGLIDDKKEAISCMVSFGYRLREPKHSRARKERQEVITWVE
3QDL Chain:A ((10-210))
----------RQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTDKDLKK---QIAAHSYFNEEMIKSASALMVVCSLRPSELLP-----------------------------------MQRLES------YILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVL--EERINKPK--IACLIALGKRVAEASQ-KSRKSKVDAITWL-
General information:
TITO was launched using:
RESULT:
Template:
3QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86340 for 1168 contacts (-73.9/contact) +
2D Compatibility (PS) -17376 + (NN) -477 + (LL) 3860
1D Compatibility (HY) -14400 + (ID) 2250
Total energy: -116983.0 ( -100.16 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QDL-query.scw
PDB file :
Tito_Scwrl_3QDL.pdb
: