Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQLEIRKLSLQIGEVPVLRDFSCKIGMGESLTIIGESGSGKTLLAKLLVGHIPQGMTVRGNIFFKG-VDLGKLTVKQWQKLR--GRDIAYLVQNPMSMFNPFQKIEAHILETI----LSHEKCSKRVALSKALEWMKRLN-LDDAISLLKKYPFELSGGMLQRIMLATILSLDPQVIILDEPTSAVDCHNCSTISAILQELQNNGKTLITVTHDYQLARDLGGQLLVISEGEVVEQGQTQTILSNPQHNYTKALTVQMEYEGDILNVGL
4U00 Chain:A ((5-237))
---IRIRNLHKWFGPLHVLKGIHLEVAPGEKLVIIGPSGSGKSTLIRTIN---------RLEDFQEGEVVVDGLSVKDDRALREIRREVGMVFQQ----FNLFPHMT--VLENVTLAPMRVRRWPREKAEKKALELLERVGILDQA----RKYPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQGGMTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKEERTRSFLQRVLH---------
General information:
TITO was launched using:
RESULT:
Template:
4U00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152664 for 1805 contacts (-84.6/contact) +
2D Compatibility (PS) -24628 + (NN) -14958 + (LL) 2356
1D Compatibility (HY) -20800 + (ID) 3850
Total energy: -214544.0 ( -118.86 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4U00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U00-query.scw
PDB file :
Tito_Scwrl_4U00.pdb
: