Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEILVLGAGYAGLKAVRNLQKQSGDFHITLVDMNDYHYEATELHEVAAGSQPKEKITFPIKDVINTNK--VNFMQDEVLKVDAENKTVTVKN--------------------NGELHYDYVVVALGFVSETFGIKGAMENALQMTNISQAENIHNHIVNTMKLYR-----ETKDENLLKLLVCGAGFTGIELAGAMVDE-----RPKYAALAGVKPEQIEIICVEAATRILPMFDDELAQYGVNLIKDLGINLMLGSMIKEIKPGEVVYGTSKEDEEL--KSITAGTIIWTTGVSGSPVMGE------SGFDQRRGRVMVNSDLRDPKYDNVYVIGDVSAFMDTESGRPFPTTAQIATRMGAHVAKNLLHQIKGEATEDFSYSPQGTVASVGNTHGLGVVGKTKIKKYPASVMKKIIMNKSLVDMGGLKELLAKGRFDLYH |
| 4GAV Chain:A ((14-365)) | ---VLILGSGWGAISFLKHIDTKK--YNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALA----EEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRG-LAVNDFLQVKGSNNIFAIGD-NAFAG------LPPTAQVAHQEAEYLAKNFDKMAQIPNFQKIDLLFEENNFKPFKYNDLGALAYLGSERAIATIRSGKRTFYTGGGLMTFYLWRILYLSMILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238660 for 2475 contacts (-96.4/contact) +
2D Compatibility (PS) -33528 + (NN) -8642 + (LL) 280
1D Compatibility (HY) -20800 + (ID) 4400
Total energy: -305750.0 ( -123.54 by residue)
QMean score : 0.547
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