Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKVLTACGNGMGSSMVIKMKVENALRQLGVSNFESASCSVGEAKGLAANYDIVVASNHLIHELDGR------TKGHLVGLDN--LMDDNEIKTKLQEIL
2L2Q Chain:A ((4-97))
SMNILLVCGAGMSTSMLVQ-RIEKYAKSKNIN-ATIEAIAETRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYGT-MNGEKVLQLAI
General information:
TITO was launched using:
RESULT:
Template:
2L2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34872 for 556 contacts (-62.7/contact) +
2D Compatibility (PS) -9500 + (NN) -3796 + (LL) 52
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -52316.0 ( -94.09 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_2L2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L2Q-query.scw
PDB file :
Tito_Scwrl_2L2Q.pdb
: