Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAH----IGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
1V7U Chain:A ((13-239))
----------------LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPV----DLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR-------
General information:
TITO was launched using:
RESULT:
Template:
1V7U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111351 for 1713 contacts (-65.0/contact) +
2D Compatibility (PS) -24364 + (NN) -13247 + (LL) 2140
1D Compatibility (HY) -17200 + (ID) 5000
Total energy: -169022.0 ( -98.67 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1V7U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V7U-query.scw
PDB file :
Tito_Scwrl_1V7U.pdb
: