Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHILEA-GENVEVLSEHNGRIVAAKQGQFLGCSFHPELTED-HRVTQLFVEMVEEYKQKALV
2YWJ Chain:A ((1-181))
-MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKN---SNLPILGTCAGMVLLSKG-TGINQILLELMDITVKRNAYGRQVDSFEKEIEFKDLGKVY-GVFIRAPVVDKILSDDVEVIARDGDKIVGVKQGKYMALSFHPELSEDGYKVYKYFVE-----------
General information:
TITO was launched using:
RESULT:
Template:
2YWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139494 for 1528 contacts (-91.3/contact) +
2D Compatibility (PS) -18697 + (NN) 1804 + (LL) 2344
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -178443.0 ( -116.78 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2YWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWJ-query.scw
PDB file :
Tito_Scwrl_2YWJ.pdb
: